Silly read only databases...

.gitea/workflows/release-linux.yml

@@ -1,67 +0,0 @@
-name: Build and Package JRuby Rails App
-
-#on:
-#  push:
-#    branches:
-#      - main
-#      - second_try
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-
-      - name: Install Java and JRuby
-        run: |
-          apt-get update && apt-get install -y wget curl libgmp-dev
-          # Install Java (needed for JRuby and jpackage)
-          apt-get install -y openjdk-17-jdk
-          
-          # Download and install JRuby directly
-          JRUBY_VERSION="9.4.6.0"
-          curl -O https://repo1.maven.org/maven2/org/jruby/jruby-dist/${JRUBY_VERSION}/jruby-dist-${JRUBY_VERSION}-bin.tar.gz
-          tar -xzf jruby-dist-${JRUBY_VERSION}-bin.tar.gz -C /opt/
-          ln -s /opt/jruby-${JRUBY_VERSION}/bin/jruby /usr/local/bin/jruby
-          ln -s /opt/jruby-${JRUBY_VERSION}/bin/bundle /usr/local/bin/bundle
-
-      - name: Install Dependencies
-        run: |
-          bundle install
-
-      - name: Build JAR with Jarbler
-        run: |
-          gem install jarbler
-          jarble
-
-      - name: Generate Unique App Name with Git Hash
-        id: vars
-        run: |
-          SHORT_HASH=$(git rev-parse --short HEAD)
-          echo "app_name=custom-app-${SHORT_HASH}" >> $GITHUB_OUTPUT
-
-      - name: Package with jpackage
-        run: |
-          # Find the generated jar file name dynamically
-          JAR_FILE=$(ls build/*.jar | head -n 1)
-          
-          # Run jpackage to bundle the application and runtime into an app-image directory
-          jpackage \
-            --type app-image \
-            --name "${{ steps.vars.outputs.app_name }}" \
-            --input "$(dirname "$JAR_FILE")" \
-            --main-jar "$(basename "$JAR_FILE")" \
-            --dest dist
-
-      - name: Compress Executable Package
-        run: |
-          cd dist
-          tar -czvf "${{ steps.vars.outputs.app_name }}.tar.gz" "${{ steps.vars.outputs.app_name }}"
-
-      - name: Upload Artifact
-        uses: actions/upload-artifact@v4
-        with:
-          name: ${{ steps.vars.outputs.app_name }}
-          path: dist/*.tar.gz

.github/workflows/ci.yml

@@ -3,7 +3,7 @@ name: CI
 on:
   pull_request:
   push:
-    branches: [ main, second_try ]
+    branches: [ main ]
 
 jobs:
   scan_ruby:
@@ -76,7 +76,7 @@ jobs:
     #    options: --health-cmd "redis-cli ping" --health-interval 10s --health-timeout 5s --health-retries 5
     steps:
       - name: Install packages
-        run: apt-get update && apt-get install --no-install-recommends -y libvips
+        run: sudo apt-get update && sudo apt-get install --no-install-recommends -y libvips
 
       - name: Checkout code
         uses: actions/checkout@v6
@@ -104,7 +104,7 @@ jobs:
     #    options: --health-cmd "redis-cli ping" --health-interval 10s --health-timeout 5s --health-retries 5
     steps:
       - name: Install packages
-        run: apt-get update && apt-get install --no-install-recommends -y libvips
+        run: sudo apt-get update && sudo apt-get install --no-install-recommends -y libvips
 
       - name: Checkout code
         uses: actions/checkout@v6

NOTES.md

@@ -1,13 +0,0 @@
-# Setting up the application
-
-## Create the database connections:
-
-bin/rails generate model Joints --no-migration
-bin/rails generate model JointsInfo --no-migration
-bin/rails generate model SpecialTest --no-migration
-
-
-# Setup the views
-
-bin/rails generate controller dashboard
-

app/controllers/dashboard_controller.rb

@@ -1,78 +0,0 @@
-require 'yaml'
-
-
-## Debugging:
-# If the response should be filtered and it is not being filtered **and** you
-# are geting all the values for that column, check to make sure that you are
-# selecting from the allowed tables and columns.
-
-
-ALLOWED_TABLES = {
-  "JointInfo" => ["Joint", "Osteokinematics"],
-  "Joint"     => ["Common Name", "Joint"]
-}
-
-
-class DashboardController < ApplicationController
-  before_action :load_manifest
-
-  def index
-    # Renders the main page
-    respond_to do |format|
-      format.html
-      format.json { render json: @manifest }
-    end
-  end
-
-  # GET /dashboard/options?table=Joint&filter_col=joint_id&value=1
-  def options
-    # 1. Define what is allowed to be accessed
-
-    table_name = params[:table]
-    col_name = params[:pluck_column]
-
-    # 2. Validate that the table and column exist in your allowlist
-    if ALLOWED_TABLES.key?(table_name) && ALLOWED_TABLES[table_name].include?(col_name)
-      table = table_name.constantize
-      quoted_col = ActiveRecord::Base.connection.quote_column_name(col_name)
-
-      if params[:filter_column].present? && ALLOWED_TABLES[table_name].include?(params[:filter_column])
-        puts "Filtering with 'filter_column'"
-        options = table.select(Arel.sql(quoted_col)).where(params[:filter_column] => params[:value]).pluck(Arel.sql(quoted_col))
-      else
-        puts "***NO FILTERING***"
-        options = table.distinct.pluck(Arel.sql(quoted_col))
-      end
-      
-      render json: options
-    else
-      render json: { error: "Invalid table or column requested" }, status: :bad_request
-    end
-  end
-
-  # GET /dashboard/data?joint=Acromioclavicular&sub_joint=X
-  def data
-    results = {}
-    
-    # Use the data_sources from YAML to aggregate data
-    @manifest['data_sources'].each do |source|
-      debugger
-      table = source['table'].constantize
-      # Find the filter value from the params that matches the filter_column
-      # We assume the filter_column name in DB matches the filter ID in YAML
-      filter_val = params[source['filter_column']]
-      
-      record = table.find_by(source['filter_column'] => filter_val)
-      results[source['key']] = record ? record.attributes : {}
-    end
-    
-    #debugger
-    render json: results
-  end
-
-  private
-
-  def load_manifest
-    @manifest = YAML.load_file(Rails.root.join('config', 'dashboard_manifest.yml'))
-  end
-end

app/controllers/joints_controller.rb

@@ -0,0 +1,14 @@
+class JointsController < ApplicationController
+  def index
+    # Grab values:
+    @available_categories = JointsDashboard.distinct.pluck(:Joint)
+
+    # Start with base query:
+    @records = JointsDashboard.all
+
+    # Filter data based on dropdown selection params
+    @records = @records.where(Joint: params[:joint]) if params[:joint].present?
+    #@records = @records.where(Joint == params[:joint]) if params[:joint].present?
+    puts @records
+  end
+end

app/helpers/dashboard_helper.rb

@@ -1,2 +0,0 @@
-module DashboardHelper
-end

app/models/joint.rb

@@ -1,5 +0,0 @@
-class Joint < ApplicationRecord
-  def readonly?
-    true
-  end
-end

app/models/joint_info.rb

@@ -1,5 +0,0 @@
-class JointInfo < ApplicationRecord
-  def readonly?
-    true
-  end
-end

app/models/joints_dashboard.rb

@@ -0,0 +1,10 @@
+class JointsDashboard < ApplicationRecord
+  self.table_name = "Joints"
+
+  # Prevent actidental updates from code:
+  def readonly?
+    true
+  end
+
+  
+end

app/models/special_test.rb

@@ -1,5 +0,0 @@
-class SpecialTest < ApplicationRecord
-  def readonly?
-    true
-  end
-end

app/views/dashboard/index.html.erb

@@ -1,219 +0,0 @@
-<h1 style="font-family: Arial, sans-serif;">Dynamic Dashboard</h1>
-
-<div id="filter-area" style="margin-bottom: 20px; display: flex; gap: 15px; font-family: Arial, sans-serif;">
-  <!-- Dropdowns injected here by JS -->
-</div>
-
-<div id="results-area" style="display: flex; gap: 20px;">
-  <!-- Grids injected here by JS -->
-</div>
-
-<style>
-  .dyn-grid { border-collapse: collapse; border: 2px solid #000; font-family: Arial; font-size: 12px; }
-  .dyn-grid td { border: 1px solid #000; padding: 4px 8px; text-align: center; }
-  .bg-dark-blue { background-color: #002060; color: white; font-weight: bold; }
-  .bg-light-blue { background-color: #D9E1F2; font-weight: bold; }
-  .bg-pale-yellow { background-color: #FFFFCC; }
-  .bg-pale-green { background-color: #E2EFDA; }
-  .bg-pale-orange { background-color: #FCE4D6; }
-</style>
-
-
-<script>
-document.addEventListener("DOMContentLoaded", () => {
-  let manifest = {};
-  let currentSelections = {};
-
-  async function init() {
-    const resp = await fetch(
-      '/dashboard',
-      {
-        headers: {
-          'Accept': 'application/json'
-        }
-      });
-    manifest = await resp.json();
-    await renderRootFilters();
-  }
-
-  async function renderRootFilters() {
-    const rootFilters = manifest.filters.filter(f => f.depends_on === null);
-    for (const f of rootFilters) {
-      await createDropdown(f);
-    }
-    //rootFilters.forEach(f => await createDropdown(f));
-  }
-
-  async function createDropdown(config) {
-    const container = document.createElement("div");
-    container.id = `container_${config.id}`;
-    
-    const label = document.createElement("label");
-    label.textContent = config.label + ": ";
-    label.style.fontWeight = "bold";
-
-    const select = document.createElement("select");
-    select.id = config.id;
-    select.innerHTML = `<option value="">Select...</option>`;
-    
-    // Marked callback as async
-    select.addEventListener("change", async (e) => {
-      const val = e.target.value;
-      currentSelections[config.id] = val;
-      
-      // 1. Clear dependent filters and data
-      clearDependents(config.id);
-      
-      // 2. Load options for children (Fixed with for...of)
-      const children = manifest.filters.filter(f => f.depends_on === config.id);
-      for (const child of children) {
-        const options = await fetchOptions(child, val);
-        populateDropdown(child.id, options);
-      }
-
-      // 3. Update data grid
-      updateGrid();
-    });
-
-    container.appendChild(label);
-    container.appendChild(select);
-    document.getElementById("filter-area").appendChild(container);
-    // Special handling for parent items:
-    if (config.depends_on === null) {
-      var options = await fetchOptions(config);
-      populateDropdown(select.id, options)
-    }
-  }
-
-  async function fetchOptions(config, value) {
-    var params
-    if (config.filter_column == undefined) {
-      console.log(config + "Undefined filter col");
-      params = new URLSearchParams({
-        table: config.table, 
-        pluck_column: config.pluck_column,
-      });
-    } else {
-       params = new URLSearchParams({
-        table: config.table,
-        pluck_column: config.pluck_column,
-        filter_column: config.filter_column,
-        value: value
-      });
-    }
-    const resp = await fetch(`/dashboard/options?${params.toString()}`);
-    return await resp.json();
-  }
-
-  function populateDropdown(id, options) {
-    const select = document.getElementById(id) || createMissingDropdown(id);
-    select.innerHTML = `<option value="">Select...</option>`;
-    options.forEach(opt => {
-      select.innerHTML += `<option value="${opt}">${opt}</option>`;
-    });
-    // If this is the last dropdown, it should be visible now
-    const container = document.getElementById(`container_${id}`);
-    if(container) container.style.display = "block";
-  }
-
-  function createMissingDropdown(id) {
-    const config = manifest.filters.find(f => f.id === id);
-    const container = document.createElement("div");
-    container.id = `container_${id}`;
-    container.style.display = "none"; // Hidden until parent is selected
-    
-    const label = document.createElement("label");
-    label.textContent = config.label + ": ";
-    
-    const select = document.createElement("select");
-    select.id = id;
-    
-    // Marked callback as async
-    select.addEventListener("change", async (e) => {
-      currentSelections[id] = e.target.value;
-      clearDependents(id);
-      const children = manifest.filters.filter(f => f.depends_on === id);
-      
-      // Fixed with for...of loop
-      for (const child of children) {
-        const opts = await fetchOptions(child, e.target.value);
-        populateDropdown(child.id, opts);
-      }
-      updateGrid();
-    });
-
-    container.appendChild(label);
-    container.appendChild(select);
-    document.getElementById("filter-area").appendChild(container);
-    return select;
-  }
-
-  function clearDependents(id) {
-    // Recursively find all filters that depend on this ID and reset them
-    manifest.filters.forEach(f => {
-      if (f.depends_on === id) {
-        const select = document.getElementById(f.id);
-        if (select) select.innerHTML = `<option value="">Select...</option>`;
-        const container = document.getElementById(`container_${f.id}`);
-        if (container) container.style.display = "none";
-        delete currentSelections[f.id];
-        clearDependents(f.id);
-      }
-    });
-  }
-
-  async function updateGrid() {
-    const params = new URLSearchParams(currentSelections);
-    const resp = await fetch(`/dashboard/data?${params.toString()}`);
-    const data = await resp.json();
-    renderLayout(data);
-  }
-
-  function renderLayout(data) {
-    const area = document.getElementById("results-area");
-    area.innerHTML = "";
-
-    // Group layout by grid name (defaults to 'main')
-    const grids = {};
-    manifest.layout.forEach(item => {
-      const gridId = item.grid || 'main';
-      if (!grids[gridId]) grids[gridId] = [];
-      grids[gridId].push(item);
-    });
-
-    Object.keys(grids).forEach(gridId => {
-      const table = document.createElement("table");
-      table.className = "dyn-grid";
-      
-      const layoutItems = grids[gridId];
-      const maxRow = Math.max(...layoutItems.map(i => i.row));
-      
-      for (let r = 0; r <= maxRow; r++) {
-        const tr = document.createElement("tr");
-        const rowItems = layoutItems.filter(i => i.row === r);
-        
-        rowItems.forEach(item => {
-          const td = document.createElement("td");
-          td.className = item.class;
-          td.colSpan = item.colspan || 1;
-          td.rowSpan = item.rowspan || 1;
-          
-          if (item.text) {
-            td.textContent = item.text;
-          } else if (item.value) {
-            // Resolve nested JSON path (e.g., "main_info.joint")
-            const parts = item.value.split('.');
-            const val = parts.reduce((obj, key) => (obj && obj[key] !== undefined) ? obj[key] : '', data);
-            td.textContent = val;
-          }
-          tr.appendChild(td);
-        });
-        table.appendChild(tr);
-      }
-      area.appendChild(table);
-    });
-  }
-
-  init();
-});
-</script>

app/views/joints/joints.html.erb

@@ -0,0 +1,39 @@
+<h1>Excel Replacement Dashboard</h1>
+
+<!-- Dropdown Filters Form -->
+<%= form_with url: dashboard_path, method: :get, local: true do |f| %>
+  <div>
+    <%= f.label :category, "Select Category:" %>
+    <%= f.select :category, options_for_select(@available_categories, params[:category]), include_blank: "All Categories" %>
+  </div>
+
+  <div>
+    <%= f.label :region, "Select Region:" %>
+    <%= f.select :region, options_for_select(@available_regions, params[:region]), include_blank: "All Regions" %>
+  </div>
+
+  <%= f.submit "Filter Data" %>
+<% end %>
+
+<hr>
+
+<!-- Displaying the Data in Specific Locations / Table -->
+<h2>Dashboard Results</h2>
+<table>
+  <thead>
+    <tr>
+      <th>Column 1</th>
+      <th>Column 2</th>
+      <th>Value</th>
+    </tr>
+  </thead>
+  <tbody>
+    <% @records.each do |record| %>
+      <tr>
+        <td><%= record.category_column %></td>
+        <td><%= record.region_column %></td>
+        <td><%= record.metric_value_column %></td>
+      </tr>
+    <% end %>
+  </tbody>
+</table>

config/application.rb

@@ -23,5 +23,8 @@ module Site
     #
     # config.time_zone = "Central Time (US & Canada)"
     # config.eager_load_paths << Rails.root.join("extras")
+
+    # Disable activerecord performing migrations.
+    config.active_record.migration_error = false
   end
 end

config/dashboard_manifest.yml

@@ -1,48 +0,0 @@
-# Filter Hierarchy: Defines the dropdowns and their dependencies
-filters:
-  - id: "joint"
-    label: "Select Joint"
-    table: "Joint"
-    pluck_column: "Joint"
-    depends_on: null # Root level
-  - id: "joint_info"
-    label: "Select kinematics"
-    table: "JointInfo" # A separate table in SQLite
-    pluck_column: "Osteokinematics"
-    depends_on: "joint" # Only appears after 'joint' is selected
-    filter_column: "Joint" # Filter SubJoint where joint_id == selected joint value
-
-# Data Mapping: Defines which tables to hit for the final grid
-data_sources:
-  - table: "Joint"
-    key: "main_info" # Nested JSON key
-    filter_column: "joint" 
-  - table: "JointInfo" # MUST MATCH DATABASE TABLE
-    key: "joint_details"
-    filter_column: "Osteokinematics"
-
-# Layout: Defines the visual grid
-# colors: dark_blue, light_blue, pale_yellow, pale_green, pale_orange
-layout:
-  - { row: 0, col: 0, colspan: 3, rowspan: 1, text: "Joint Information", class: "bg-dark-blue" }
-  - { row: 1, col: 0, colspan: 2, rowspan: 1, text: "Anatomical Name", class: "bg-light-blue" }
-  - { row: 2, col: 0, colspan: 2, rowspan: 1, value: "main_info.Joint", class: "bg-pale-yellow" }
-  - { row: 1, col: 2, colspan: 1, rowspan: 1, text: "Common Name", class: "bg-light-blue" }
-  - { row: 2, col: 2, colspan: 1, rowspan: 1, value: "main_info.Common Name", class: "bg-pale-yellow" }
-  - { row: 3, col: 0, colspan: 1, rowspan: 1, text: "Diarthrodial Joint Type", class: "bg-light-blue" }
-  - { row: 4, col: 0, colspan: 1, rowspan: 1, value: "main_info.Diarthrodial joint", class: "bg-pale-yellow" }
-  - { row: 3, col: 1, colspan: 1, rowspan: 1, text: "Alternate Name", class: "bg-light-blue" }
-  - { row: 4, col: 1, colspan: 1, rowspan: 1, value: "main_info.Alternate Name", class: "bg-pale-yellow" }
-  - { row: 3, col: 2, colspan: 1, rowspan: 1, text: "Planes of Freedom", class: "bg-light-blue" }
-  - { row: 4, col: 2, colspan: 1, rowspan: 1, value: "main_info.# of Plains", class: "bg-pale-yellow" }
-  - { row: 5, col: 0, colspan: 1, rowspan: 1, text: "Arthrokinematic Rule", class: "bg-light-blue"}
-  - { row: 6, col: 0, colspan: 1, rowspan: 1, value: "joint_details.Arthrokinematic Rule", class: "bg-pale-yellow"}
-  #- { row: 5, col: 0, colspan: 4, rowspan: 1, value: "main_info.notes", class: "bg-pale-green" }
-  
-  # Ligaments Table (separate grid)
-  #- { grid: "ligaments", row: 0, col: 0, colspan: 1, rowspan: 1, text: "Ligaments", class: "bg-dark-blue" }
-  #- { grid: "ligaments", row: 0, col: 1, colspan: 1, rowspan: 1, value: ".list", class: "bg-pale-orange" }
-
-
-# http://localhost:3000/dashboard/options?table=JointInfo&pluck_column=Osteokinematics&filter_col=undefined&value=Glenohumeral
-# http://localhost:3000/dashboard/options?table=JointInfo&pluck_column=Osteokinematics&filter_col=Common%20Joint%20Name&value=Shoulder

config/database.yml

@@ -11,10 +11,11 @@ default: &default
 
 development:
   adapter: sqlite3
-  max_connections: 5
+  #database: "file:db/anat_proj.db?mode=ro"
-  timeout: 5000
+  database: "db/anat_proj.db"
-  database: storage/anat_proj.db
   #readonly: true
+  pool: 5
+  timeout: 5000
 
 # Warning: The database defined as "test" will be erased and
 # re-generated from your development database when you run "rake".

config/environments/development.rb

@@ -75,4 +75,8 @@ Rails.application.configure do
 
   # Apply autocorrection by RuboCop to files generated by `bin/rails generate`.
   # config.generators.apply_rubocop_autocorrect_after_generate!
+
+  config.active_record.migration_error = false
+  config.log_level = :debug
+  #config.active_record,verbose_query_logs = true
 end

config/routes.rb

@@ -11,8 +11,5 @@ Rails.application.routes.draw do
 
   # Defines the root path route ("/")
   # root "posts#index"
-  root "dashboard#index"
+  root "joints#index"
-  get "dashboard", to: "dashboard#index"
-  get "dashboard/options", to: "dashboard#options"
-  get "dashboard/data", to: "dashboard#data"
 end

test/controllers/dashboard_controller_test.rb

@@ -1,14 +0,0 @@
-require "test_helper"
-
-class DashboardControllerTest < ActionDispatch::IntegrationTest
-  test "options returns JSON" do
-    get "/dashboard/options",
-        params: {
-          table: 'Joint',
-          pluck_column: 'Joint'
-        }
-
-    assert_response :success
-    assert_equal "application/json", response.media_type
-  end
-end

test/fixtures/joints_infos.yml

@@ -1,11 +0,0 @@
-# Read about fixtures at https://api.rubyonrails.org/classes/ActiveRecord/FixtureSet.html
-
-# This model initially had no columns defined. If you add columns to the
-# model remove the "{}" from the fixture names and add the columns immediately
-# below each fixture, per the syntax in the comments below
-#
-one: {}
-# column: value
-#
-two: {}
-# column: value

test/fixtures/special_tests.yml

@@ -1,11 +0,0 @@
-# Read about fixtures at https://api.rubyonrails.org/classes/ActiveRecord/FixtureSet.html
-
-# This model initially had no columns defined. If you add columns to the
-# model remove the "{}" from the fixture names and add the columns immediately
-# below each fixture, per the syntax in the comments below
-#
-one: {}
-# column: value
-#
-two: {}
-# column: value

test/models/joint_test.rb

@@ -1,7 +0,0 @@
-require "test_helper"
-
-class JointTest < ActiveSupport::TestCase
-  # test "the truth" do
-  #   assert true
-  # end
-end

test/models/joints_dashboard_test.rb

@@ -1,6 +1,6 @@
 require "test_helper"
 
-class JointsInfoTest < ActiveSupport::TestCase
+class JointsDashboardTest < ActiveSupport::TestCase
   # test "the truth" do
   #   assert true
   # end

test/models/special_test_test.rb

@@ -1,7 +0,0 @@
-require "test_helper"
-
-class SpecialTestTest < ActiveSupport::TestCase
-  # test "the truth" do
-  #   assert true
-  # end
-end